Basic Information
Locus ID:
Chr20G007410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 12683417 | 12686435 | - | Chr20G007410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 93 | 152 | 1.1E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 669 | 867 | 2.4E-44 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 504 | 562 | 5.9E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 60 | 2.1E-4 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 196 | 549 | 3.3E-64 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 661 | 945 | 9.16E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 252 | 3.74E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 309 | 595 | 1.3E-74 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 744 | 938 | 2.7E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 658 | 743 | 4.1E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 19 | 307 | 6.6E-66 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 214 | 238 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 115 | 138 | 7.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 114 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 262 | 286 | 70.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 667 | 939 | 1.2E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 667 | 939 | 35.806381 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 788 | 800 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_039817553.1 | receptor-like protein kinase HSL1 [Panicum virgatum] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7D6R3 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G169100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology