Basic Information
Locus ID:
Chr20G005720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 6845923 | 6851159 | - | Chr20G005720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 3.82634E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 251 | 307 | 1.5E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 4 | 75 | 1.3E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 148 | 186 | 7.6E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 333 | 369 | 1.3E-10 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 7.66E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 247 | 313 | 5.49E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 315 | 374 | 2.25E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 147 | 195 | 2.44E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 326 | 372 | 3.9E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 78 | 5.8E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 241 | 307 | 1.3E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 141 | 191 | 1.2E-19 | - |
| SMART | SM00213 | ubq_7 | 1 | 74 | 5.6E-16 | IPR000626 |
| SMART | SM00727 | CBM | 249 | 292 | 3.7E-9 | IPR006636 |
| SMART | SM00165 | uba_6 | 334 | 371 | 1.4E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 148 | 188 | 1.3E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 375 | 5.1E-106 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 149 | 189 | 12.209535 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 78 | 18.061903 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 332 | 372 | 14.185496 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 375 | 5.9E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 359 | 5.9E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 344 | 5.9E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 277 | 299 | 5.9E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 225 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_051187971.1 | probable ubiquitin receptor RAD23 isoform X2 [Lolium perenne] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T458 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_48961 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology