Basic Information
Locus ID:
Chr20G005020
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 5493523 | 5498392 | + | Chr20G005020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 121 | 181 | 6.8E-12 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 70 | 1.2E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 327 | 600 | 2.2E-42 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 193 | 7.94E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 309 | 606 | 8.61E-73 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 302 | 400 | 3.5E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 212 | 9.5E-52 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 401 | 623 | 1.0E-57 | - |
| SMART | SM00220 | serkin_6 | 325 | 605 | 3.9E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 325 | 625 | 35.071415 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 443 | 455 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 331 | 353 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 168 | 181 | 5.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 123 | 136 | 5.8E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30520.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002445573.1 | probable LRR receptor-like serine/threonine-protein kinase At2g23950 [Sorghum bicolor] | 0 |
| Q8VYT3 | Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana OX=3702 GN=At4g30520 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PS22 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS29655 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology