halophFGD

Basic Information

Locus ID: Chr20G004320

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: F-box domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000020	4187161	4189596	+	Chr20G004320

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	19	55	2.3E-7	IPR001810
Pfam	PF00646	F-box domain	408	440	7.8E-6	IPR001810
Pfam	PF07734	F-box associated	577	652	6.5E-5	IPR006527
SUPERFAMILY	SSF81383	F-box domain	17	84	8.24E-11	IPR036047
SUPERFAMILY	SSF81383	F-box domain	409	460	5.63E-7	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	10	58	4.0E-6	-
SMART	SM00256	fbox_2	406	444	12.0	IPR001810
SMART	SM00256	fbox_2	22	62	2.5E-5	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	114	315	1.9E-16	IPR017451
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	496	666	1.7E-12	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	16	61	9.100053	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06240.1	F-box family protein.
RefSeq	XP_025823818.1	uncharacterized protein LOC112899532 isoform X1 [Panicum hallii]
Swiss-Prot	Q8GXC7	F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1
TrEMBL	A0A5J9T2T6	F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48752 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g26440
Plantaginaceae	Plantago ovata	1	Pov_00001437
Poaceae	Echinochloa crus-galli	36	AH01.3042, AH02.3358, AH05.1506, AH05.1507, AH06.376 ... AH07.2619, AH07.811, AH08.1670, BH01.2005, BH01.2038, BH01.2076, BH01.803, BH06.1811, BH07.2431, BH07.933, BH07.934, BH07.936, BH07.938, BH07.940, BH09.726, BH09.729, CH01.2070, CH01.2081, CH01.2082, CH01.2111, CH05.1885, CH07.691, CH07.696, CH08.966, CH09.2969, Contig2934.1, Contig309.144, Contig328.102, Contig328.19, Contig328.83, Contig328.86
Poaceae	Eleusine coracana subsp. coracana	37	gene-QOZ80_2AG0105870, gene-QOZ80_2AG0112090 ... gene-QOZ80_2AG0128460, gene-QOZ80_2AG0128470, gene-QOZ80_2AG0128490, gene-QOZ80_2AG0137510, gene-QOZ80_2BG0159280, gene-QOZ80_2BG0159300, gene-QOZ80_2BG0165500, gene-QOZ80_2BG0181130, gene-QOZ80_2BG0183770, gene-QOZ80_2BG0183870, gene-QOZ80_2BG0183890, gene-QOZ80_2BG0184140, gene-QOZ80_3AG0217000, gene-QOZ80_3BG0262280, gene-QOZ80_3BG0262470, gene-QOZ80_4AG0321250, gene-QOZ80_4AG0321270, gene-QOZ80_4BG0352180, gene-QOZ80_4BG0356940, gene-QOZ80_4BG0356970, gene-QOZ80_4BG0356990, gene-QOZ80_4BG0357010, gene-QOZ80_5AG0364670, gene-QOZ80_5AG0364710, gene-QOZ80_5AG0365020, gene-QOZ80_5BG0412370, gene-QOZ80_5BG0412650, gene-QOZ80_5BG0412900, gene-QOZ80_5BG0446890, gene-QOZ80_8AG0633810, gene-QOZ80_8BG0660770, gene-QOZ80_8BG0661040, gene-QOZ80_8BG0662850, gene-QOZ80_9AG0674200, gene-QOZ80_9AG0674340
Poaceae	Hordeum vulgare	13	HORVU.MOREX.r3.1HG0045230.1.CDS1 ... HORVU.MOREX.r3.1HG0085460.1.CDS1, HORVU.MOREX.r3.1HG0085480.1.CDS1, HORVU.MOREX.r3.2HG0196840.1.CDS1, HORVU.MOREX.r3.2HG0196850.1.CDS1, HORVU.MOREX.r3.4HG0382150.1.CDS1, HORVU.MOREX.r3.4HG0397230.1.CDS1, HORVU.MOREX.r3.5HG0506250.1.CDS1, HORVU.MOREX.r3.5HG0506280.1.CDS1, HORVU.MOREX.r3.5HG0533100.1.CDS1, HORVU.MOREX.r3.6HG0547780.1.CDS1, HORVU.MOREX.r3.6HG0632730.1.CDS1, HORVU.MOREX.r3.7HG0658860.1.CDS1
Poaceae	Lolium multiflorum	55	gene-QYE76_001382, gene-QYE76_001898, gene-QYE76_003730 ... gene-QYE76_006979, gene-QYE76_009060, gene-QYE76_009061, gene-QYE76_009062, gene-QYE76_009063, gene-QYE76_009066, gene-QYE76_009067, gene-QYE76_009512, gene-QYE76_010515, gene-QYE76_011461, gene-QYE76_011632, gene-QYE76_013762, gene-QYE76_015613, gene-QYE76_015628, gene-QYE76_015629, gene-QYE76_015635, gene-QYE76_015672, gene-QYE76_015673, gene-QYE76_015674, gene-QYE76_018494, gene-QYE76_019836, gene-QYE76_027694, gene-QYE76_029440, gene-QYE76_030761, gene-QYE76_032747, gene-QYE76_032779, gene-QYE76_033739, gene-QYE76_033760, gene-QYE76_033761, gene-QYE76_033762, gene-QYE76_035036, gene-QYE76_035376, gene-QYE76_035377, gene-QYE76_036236, gene-QYE76_036242, gene-QYE76_036246, gene-QYE76_036247, gene-QYE76_036258, gene-QYE76_036557, gene-QYE76_040664, gene-QYE76_043485, gene-QYE76_043490, gene-QYE76_048443, gene-QYE76_058094, gene-QYE76_058786, gene-QYE76_060543, gene-QYE76_060544, gene-QYE76_060758, gene-QYE76_061213, gene-QYE76_061477, gene-QYE76_061694, gene-QYE76_061994
Poaceae	Oryza coarctata	20	Oco02G009690, Oco09G005800, Oco09G014390, Oco09G014490 ... Oco09G014570, Oco10G014540, Oco18G010160, Oco18G011840, Oco18G011850, Oco18G011900, Oco19G006340, Oco19G006380, Oco19G006400, Oco19G006570, Oco20G004030, Oco20G006370, Oco20G006390, Oco20G006560, Oco23G010650, Oco24G010470
Poaceae	Oryza sativa	22	LOC_Os01g07160.1, LOC_Os01g07190.1, LOC_Os01g67790.1 ... LOC_Os02g35560.1, LOC_Os02g54240.1, LOC_Os04g49950.1, LOC_Os05g02540.1, LOC_Os05g02550.1, LOC_Os05g02570.1, LOC_Os05g44370.1, LOC_Os05g44580.1, LOC_Os06g12140.1, LOC_Os07g16420.1, LOC_Os07g16800.1, LOC_Os08g14710.1, LOC_Os09g39000.1, LOC_Os10g34280.1, LOC_Os10g34300.1, LOC_Os10g34340.1, LOC_Os10g36310.1, LOC_Os12g42340.1, LOC_Os12g42360.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G196000, gene-BS78_01G199300, gene-BS78_K179100 ... gene-BS78_04G041500, gene-BS78_04G197900, gene-BS78_09G220500, gene-BS78_09G220700, gene-BS78_09G224900, gene-BS78_09G225000, gene-BS78_09G225100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0105878, Pt_Chr0304940, Pt_Chr0304975, Pt_Chr0304977 ... Pt_Chr0502618, Pt_Chr0504301, Pt_Chr0505766, Pt_Chr0605708, Pt_Chr0702143
Poaceae	Sporobolus alterniflorus	22	Chr01G014930, Chr06G014740, Chr09G011690, Chr09G025790 ... Chr0G011240, Chr0G011260, Chr12G001310, Chr12G021930, Chr12G021940, Chr13G007420, Chr13G007440, Chr13G013570, Chr13G013580, Chr15G016770, Chr16G001410, Chr20G004320, Chr22G002140, Chr22G002150, Chr23G003060, Chr26G014250, Chr26G014260, Chr29G004200
Poaceae	Thinopyrum elongatum	24	Tel1E01G294900, Tel1E01G627500, Tel1E01G628100 ... Tel1E01G628600, Tel1E01G628700, Tel1E01G639900, Tel2E01G765300, Tel2E01G765700, Tel2E01G766300, Tel2E01G861600, Tel2E01G862300, Tel2E01G862400, Tel5E01G067000, Tel5E01G067100, Tel5E01G067200, Tel5E01G067600, Tel5E01G660200, Tel5E01G660300, Tel6E01G058500, Tel6E01G087200, Tel7E01G177200, Tel7E01G692400, Tel7E01G693500, Tel7E01G695000
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG057380, gene_TRIDC1BG064970-44813 ... gene_TRIDC1BG064970-6816, gene_TRIDC1BG069610, gene_TRIDC2AG064380, gene_TRIDC2BG068710, gene_TRIDC3AG050000, gene_TRIDC4AG059420, gene_TRIDC4AG059450, gene_TRIDC5AG004090, gene_TRIDC5BG004250, gene_TRIDC7BG007410
Poaceae	Triticum aestivum	54	TraesCS1A02G078500.1.cds1, TraesCS1A02G384100.1.cds1 ... TraesCS1A02G385300.1, TraesCS1B02G308400.1, TraesCS1B02G313600.1.cds1, TraesCS1B02G332800.1.cds1, TraesCS1B02G396500.1.cds1, TraesCS1B02G410900.1.cds1, TraesCS1B02G411400.1.cds1, TraesCS1B02G411600.1.cds1, TraesCS1B02G418700.1.cds1, TraesCS1B02G442700.1.cds1, TraesCS1B02G467200.1.cds1, TraesCS1D02G158800.1, TraesCS1D02G320500.1, TraesCS1D02G392600.1.cds1, TraesCS1D02G392800.1.cds1, TraesCS1D02G392900.1.cds1, TraesCS2A02G038600.1.cds1, TraesCS2A02G450900.1, TraesCS2B02G472700.1.cds1, TraesCS2B02G535900.1.cds1, TraesCS2D02G038000.1.cds1, TraesCS2D02G508500.1, TraesCS3A02G371600.1.cds1, TraesCS3B02G009800.1.cds1, TraesCS3B02G195000.1.cds1, TraesCS3B02G403900.1, TraesCS4A02G382500.1.cds1, TraesCS4A02G382600.1.cds1, TraesCS4D02G314600.1, TraesCS5A02G027700.1, TraesCS5A02G494000.1, TraesCS5B02G026800.1.cds1, TraesCS5B02G026900.1.cds1, TraesCS5B02G027100.1.cds1, TraesCS5B02G027200.1.cds1, TraesCS5B02G422300.1.cds1, TraesCS5D02G035400.1.cds1, TraesCS5D02G035500.1.cds1, TraesCS6A02G017200.1, TraesCS6A02G017800.1.cds1, TraesCS6A02G056700.1.cds1, TraesCS6B02G076200.1.cds1, TraesCS6B02G315000.1.cds1, TraesCS6B02G473100.1.cds1, TraesCS6D02G060000.1.cds1, TraesCS7A02G084200.1.cds1, TraesCS7B02G050600.1.cds1, TraesCS7B02G313100.1.cds1, TraesCS7B02G372900.1.cds1, TraesCS7D02G079200.1.cds1, TraesCS7D02G149100.1.cds1, TraesCS7D02G353200.1.cds1
Poaceae	Zoysia japonica	1	nbis-gene-47752
Poaceae	Zoysia macrostachya	1	Zma_g23115