Basic Information
Locus ID:
Chr20G003940
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 3425323 | 3443799 | + | Chr20G003940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 448 | 750 | 2.1E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 118 | 155 | 9.7E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 444 | 755 | 3.34E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 115 | 158 | 2.79E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 102 | 160 | 1.5E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 441 | 764 | 2.6E-90 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 448 | 753 | 52.19133 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 118 | 155 | 11.594026 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 118 | 155 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 449 | 464 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 947 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 854 | - | - |
| Coils | Coil | Coil | 42 | 62 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039815555.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Panicum virgatum] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2E2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eragrostis curvula OX=38414 GN=EJB05_48675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology