Basic Information
Locus ID:
Chr20G002810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Caleosin related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 2319644 | 2321437 | - | Chr20G002810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 156 | 391 | 8.04E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 58 | 2.45E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 419 | 5.3E-9 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 556 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039839426.1 | uncharacterized protein LOC120699490 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9VWP0 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_14322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.1139, CH01.5106 |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0111130, gene-QOZ80_2BG0159870 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0296530.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G006790, Oco06G006990 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g12190.1, LOC_Os03g12200.1, LOC_Os03g12210.1 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G013590, Chr05G020180, Chr20G002810, Chr24G001980 |