Basic Information
Locus ID:
Chr20G001800
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 1469405 | 1474323 | - | Chr20G001800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 172 | 213 | 7.7E-8 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 70 | 136 | 1.8E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 222 | 1.02E-36 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 328 | 1.9E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 155 | 217 | 8.5E-14 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 218 | 295 | 1.1E-6 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 154 | 5.0E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 260 | 306 | 4.9 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 154 | 215 | 1.6E-10 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 69 | 138 | 9.0E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 68 | 142 | 14.641094 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 219 | 11.861064 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.2 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835AB47 | Oligouridylate-binding protein 1B-like OS=Digitaria exilis OX=1010633 GN=HU200_061832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology