Basic Information
Locus ID:
Chr20G001700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 1410312 | 1412877 | - | Chr20G001700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 303 | 346 | 7.96913E-6 | - |
| Pfam | PF00069 | Protein kinase domain | 423 | 684 | 2.0E-42 | IPR000719 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 299 | 353 | 5.18E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 400 | 687 | 3.78E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 496 | 695 | 2.6E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 398 | 495 | 8.5E-24 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 256 | 353 | 2.6E-9 | - |
| SMART | SM00181 | egf_5 | 306 | 353 | 0.003 | IPR000742 |
| SMART | SM00179 | egfca_6 | 303 | 353 | 4.9E-9 | IPR001881 |
| SMART | SM00220 | serkin_6 | 420 | 690 | 4.1E-23 | IPR000719 |
| SMART | SM00181 | egf_5 | 255 | 302 | 110.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 420 | 690 | 34.011364 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 540 | 552 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 328 | 339 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 303 | 337 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 426 | 449 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_015613284.1 | wall-associated receptor kinase 1 [Oryza sativa Japonica Group] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5S6RA42 | Protein kinase domain containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g02720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology