Basic Information
Locus ID:
Chr20G001400
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 1166035 | 1167810 | + | Chr20G001400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 180 | 217 | 2.45862E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 178 | 223 | 1.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 224 | 2.08E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 228 | 3.6E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 180 | 217 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 180 | 218 | 11.751628 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 195 | 204 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 134 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_039854814.1 | predicted GPI-anchored protein 58 [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0RIE0 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG376600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology