Basic Information
Locus ID:
Chr20G001390
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 1160182 | 1165161 | + | Chr20G001390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 292 | 349 | 3.0E-6 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 163 | 220 | 3.6E-7 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 398 | 945 | 2.2E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 396 | 947 | 1.16E-64 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 221 | 5.83E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 348 | 1.34E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 393 | 585 | 5.8E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 234 | 1.6E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 359 | 9.0E-8 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 649 | 949 | 1.1E-33 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 279 | 350 | 12.828484 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 151 | 221 | 13.304008 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 397 | 948 | 36.24081 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 878 | 897 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 398 | 413 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 127 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025797471.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Panicum hallii] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T0R0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology