Basic Information
Locus ID:
Chr19G018770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 43904275 | 43906693 | - | Chr19G018770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 166 | 236 | 5.24087E-32 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 165 | 234 | 3.3E-26 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 95 | 173 | 5.52E-27 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 166 | 236 | 1.37E-23 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 166 | 239 | 1.4E-31 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 80 | 165 | 7.1E-43 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 165 | 234 | 2.1E-31 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 97 | 233 | 6.1E-39 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 130 | 137 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 93 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_025792202.1 | eukaryotic translation initiation factor 5A-4 [Panicum hallii] | 0 |
| P56333 | Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum OX=4113 GN=EIF5A1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VX86 | Eukaryotic translation initiation factor 5A OS=Eragrostis curvula OX=38414 GN=EJB05_13688 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology