Basic Information
Locus ID:
Chr19G018750
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 43893242 | 43901716 | + | Chr19G018750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 12 | 127 | 5.77404E-8 | IPR038005 |
| Pfam | PF18052 | Rx N-terminal domain | 14 | 88 | 1.3E-15 | IPR041118 |
| Pfam | PF00560 | Leucine Rich Repeat | 721 | 739 | 1.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 626 | 647 | 0.87 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 163 | 403 | 1.1E-36 | IPR002182 |
| Pfam | PF00560 | Leucine Rich Repeat | 673 | 695 | 0.84 | IPR001611 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 152 | 416 | 3.62E-47 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 476 | 848 | 6.46E-60 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1040 | 1315 | 1.69E-25 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 809 | 996 | 1.45E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 849 | 955 | 1.9E-20 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 13 | 130 | 3.8E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1186 | 1334 | 4.4E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 959 | 1175 | 2.6E-15 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 143 | 315 | 2.0E-32 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 402 | 488 | 8.4E-12 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 320 | 401 | 1.2E-5 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 519 | 848 | 4.3E-70 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 1274 | 1301 | 29.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 909 | 933 | 69.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 719 | 746 | 47.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 743 | 766 | 0.27 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1250 | 1274 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 861 | 885 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 599 | 623 | 130.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 790 | 817 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1226 | 1253 | 59.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 623 | 653 | 230.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 695 | 719 | 230.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 766 | 789 | 72.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 671 | 691 | 94.0 | IPR006553 |
| PRINTS | PR00364 | Disease resistance protein signature | 183 | 198 | 1.0E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 259 | 273 | 1.0E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 355 | 369 | 1.0E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 907 | 923 | 1.0E-18 | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
| Coils | Coil | Coil | 39 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14470.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_034568663.1 | putative disease resistance protein RGA1 isoform X3 [Setaria viridis] | 0 |
| Q7XA40 | Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VX58 | Rx_N domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_13684 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology