Basic Information
Locus ID:
Chr19G018710
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 43841129 | 43842596 | - | Chr19G018710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 270 | 305 | 1.38673E-5 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 270 | 311 | 2.8E-7 | IPR001881 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 36 | 78 | 6.5E-10 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 267 | 313 | 6.48E-6 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 269 | 314 | 1.5E-7 | - |
| SMART | SM00181 | egf_5 | 272 | 312 | 0.007 | IPR000742 |
| SMART | SM00179 | egfca_6 | 269 | 312 | 4.1E-7 | IPR001881 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 269 | 312 | 9.721512 | IPR000742 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 287 | 298 | - | IPR000152 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_044406055.1 | wall-associated receptor kinase 1-like [Triticum aestivum] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6NIN3 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology