Basic Information
Locus ID:
Chr19G017700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 41918452 | 41926318 | - | Chr19G017700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 806 | 961 | 6.2112E-64 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 341 | 960 | 2.8E-79 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 339 | 962 | 5.3E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 696 | 972 | 1.1E-55 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 332 | 561 | 2.7E-65 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 341 | 963 | 54.880745 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 342 | 357 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 905 | 922 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| Coils | Coil | Coil | 960 | 973 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_039793420.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Panicum virgatum] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811N9Q3 | Ubiquitin carboxyl-terminal hydrolase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS14530 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology