Basic Information
Locus ID:
Chr19G017650
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 41813107 | 41820445 | + | Chr19G017650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 266 | 325 | 1.24413E-16 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 52 | 218 | 2.4E-46 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 266 | 326 | 9.1E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 246 | 329 | 1.94E-20 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 57 | 235 | 3.37E-51 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 236 | 332 | 8.1E-32 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 259 | 327 | 8.1E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 38 | 221 | 4.2E-53 | - |
| SMART | SM00220 | serkin_6 | 1 | 218 | 1.2E-27 | IPR000719 |
| SMART | SM00054 | efh_1 | 265 | 293 | 1.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 301 | 329 | 1.1 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 218 | 31.467243 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 261 | 296 | 14.094975 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 297 | 332 | 9.296966 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 310 | 322 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 80 | 92 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38910.1 | calcium-dependent protein kinase 20. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_052162133.1 | calcium-dependent protein kinase 17 [Oryza glaberrima] | 0 |
| Q7XIM0 | Calcium-dependent protein kinase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9RML7 | Calcium-dependent protein kinase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag3G02210 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr19G017650 |