Basic Information
Locus ID:
Chr19G017620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 41714551 | 41747894 | + | Chr19G017620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 203 | 531 | 3.58539E-164 | - |
| CDD | cd00121 | MATH | 62 | 185 | 4.23353E-37 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 630 | 882 | 2.5E-73 | IPR024729 |
| Pfam | PF00917 | MATH domain | 67 | 187 | 3.3E-18 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 892 | 1101 | 3.2E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 205 | 526 | 1.4E-45 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 62 | 195 | 3.43E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 200 | 557 | 1.79E-96 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 202 | 530 | 1.1E-87 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 690 | 807 | 1.5E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 808 | 905 | 1.9E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 60 | 201 | 6.8E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 62 | 166 | 1.5E-18 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 205 | 529 | 39.216335 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 60 | 185 | 36.039474 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 206 | 221 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 445 | 462 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| Coils | Coil | Coil | 542 | 570 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039797660.1 | ubiquitin C-terminal hydrolase 12-like isoform X2 [Panicum virgatum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9W0S6 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology