Basic Information
Locus ID:
Chr19G015590
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 35012616 | 35017815 | + | Chr19G015590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 15 | 348 | 6.4964E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 145 | 4.0E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 347 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 190 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 64 | 101 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 199 | 241 | 4.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 15 | 56 | 1.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 347 | 1.83E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 352 | 1.2E-115 | IPR015943 |
| SMART | SM00320 | WD40_4 | 62 | 102 | 3.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 56 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 5.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 6.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 241 | 4.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 348 | 7.0E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 155 | 15.72169 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 241 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 19 | 56 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 190 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 148 | 12.762857 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 350 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 241 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 190 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 102 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 19 | 56 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 355 | 11.65559 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 70 | 102 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 335 | 349 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 133 | 147 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 335 | 349 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 43 | 57 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 228 | 242 | 1.1E-6 | IPR020472 |
| Hamap | MF_03037 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. | 11 | 351 | 28.353848 | IPR028608 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025799989.1 | protein CIA1 [Panicum hallii] | 0 |
| O80990 | Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2S3GX36 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Panicum hallii OX=206008 GN=PAHAL_2G077500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11623, jg31955, jg32687 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2391, Sbi_jg34126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2382 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012546 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78109, Sgl80615 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016841, gene:ENSEOMG00000039732 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001770, CQ.Regalona.r1.9BG0020590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30275530 |
| Apiaceae | Apium graveolens | 5 | Ag10G02042, Ag10G02043, Ag10G02044, Ag10G02045, Ag4G01465 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016520, scaffold004131G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718010, gene-LOC103720025, gene-LOC120109818 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.642.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G11511, Ftri15G15672 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26060.1, AT4G32990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002028m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g024580.2N, BniB07g008040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0668 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0764 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0060s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2065 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037624 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09702, Lb2G09703, Lb5G28991, Lb5G28992 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.724, BH03.857, CH03.2, CH03.954 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0561970, gene-QOZ80_7BG0595540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042018 |
| Poaceae | Oryza coarctata | 2 | Oco13G004560, Oco14G005360 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g14830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G112300 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G015590, Chr24G004550, Chr24G012880, Chr27G000550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G751700, Tel7E01G751900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061960, gene_TRIDC7BG055270 |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G446400.2, TraesCS7A02G446500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb304430_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51868, nbis-gene-58360 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4981 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.241, evm.TU.LG06.1038, evm.TU.LG11.487 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g22260, gene.Posoc10g01020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.771 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17657 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13603 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.14 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012285 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15864 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8986 |
| Salicaceae | Populus euphratica | 2 | populus_peu02424, populus_peu02430 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132600334, gene-LOC132629872, gene-LOC132633644 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI004661900, SOLCI007330400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107030781, gene-LOC107031510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12315 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0827 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24200.v3.1 |