Basic Information
Locus ID:
Chr19G015250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 32342670 | 32346797 | + | Chr19G015250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 151 | 179 | 1.9E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 185 | 211 | 1.4E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 144 | 180 | 1.26E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 143 | 181 | 3.3E-17 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 182 | 214 | 2.0E-9 | - |
| SMART | SM00547 | zf_4 | 153 | 177 | 2.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 186 | 210 | 9.3E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 184 | 213 | 9.585588 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 151 | 180 | 10.116323 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 155 | 174 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 188 | 207 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 147 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VV15 | Zinc finger protein VAR3, chloroplastic (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12844 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology