Basic Information
Locus ID:
Chr19G010530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 13597304 | 13614485 | - | Chr19G010530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 205 | 533 | 3.64186E-167 | - |
| CDD | cd00121 | MATH | 64 | 187 | 5.59433E-38 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 632 | 884 | 2.3E-75 | IPR024729 |
| Pfam | PF00917 | MATH domain | 69 | 187 | 1.1E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 207 | 528 | 6.0E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 894 | 1103 | 3.1E-54 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 202 | 558 | 1.61E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 60 | 192 | 3.92E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 810 | 907 | 4.7E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 60 | 203 | 4.8E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 692 | 809 | 2.1E-43 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 204 | 532 | 2.8E-89 | - |
| SMART | SM00061 | math_3 | 64 | 168 | 4.5E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 207 | 531 | 40.689789 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 62 | 187 | 37.369087 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 208 | 223 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 447 | 464 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| Coils | Coil | Coil | 547 | 567 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021301375.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Sorghum bicolor] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6VK65 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_3G378600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology