Basic Information
Locus ID:
Chr19G009700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 11821864 | 11825534 | - | Chr19G009700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 154 | 197 | 1.4E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 34 | 110 | 6.7E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 202 | 259 | 9.0E-25 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 204 | 1.77E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 31 | 99 | 5.36E-18 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 101 | 151 | 6.54E-14 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 226 | 266 | 5.4E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 224 | 6.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 197 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 198 | 11.840146 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 27 | 98 | 25.332533 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 100 | 166 | 24.031021 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_025804804.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X2 [Panicum hallii] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WMN8 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_01309 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology