Basic Information
Locus ID:
Chr19G009300
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 10900524 | 10903169 | - | Chr19G009300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 476 | 507 | 1.3E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 378 | 459 | 5.0E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 378 | 460 | 3.8E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 80 | - | - |
| Coils | Coil | Coil | 412 | 439 | - | - |
| Coils | Coil | Coil | 377 | 404 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_025808696.1 | DNA ligase 1-like [Panicum hallii] | 0 |
| TrEMBL | A0A5J9WM34 | PAPA-1 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_01086 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology