Basic Information
Locus ID:
Chr19G008590
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 10032275 | 10035693 | - | Chr19G008590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 592 | 685 | 7.1E-14 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 592 | 696 | 5.07E-19 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 577 | 785 | 3.3E-45 | IPR016135 |
| SMART | SM00212 | ubc_7 | 561 | 722 | 0.0011 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 559 | 722 | 16.963959 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 496 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 0 |
| RefSeq | XP_039802298.1 | probable ubiquitin-conjugating enzyme E2 23 [Panicum virgatum] | 0 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835BLF8 | UBC core domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_033282 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH05.3516 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr04G019680, Chr06G008110, Chr06G020560, Chr19G008590 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS2D02G051900.1, TraesCSU02G013600.1 |