Basic Information
Locus ID:
Chr19G008040
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 9268172 | 9270875 | + | Chr19G008040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 10 | 241 | 2.1E-85 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 130 | 231 | 1.18E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 126 | 244 | 1.2E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 131 | 232 | 22.954494 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_003579189.1 | auxin-responsive protein IAA30 [Brachypodium distachyon] | 0 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 0 | |
| TrEMBL | I1IGR8 | Auxin-responsive protein OS=Brachypodium distachyon OX=15368 GN=100833839 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology