Basic Information
Locus ID:
Chr19G007250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 8378539 | 8383719 | + | Chr19G007250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 257 | 298 | 7.46562E-12 | - |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 7.8E-16 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 171 | 189 | 1.2E-8 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 171 | 216 | 2.72E-5 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 324 | 9.54E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 330 | 4.8E-11 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 193 | 249 | 3.2E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 1.2E-16 | - |
| SMART | SM00343 | c2hcfinal6 | 199 | 215 | 0.22 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 5.6E-32 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 173 | 189 | 0.12 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 200 | 215 | 8.762648 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 14.382104 | IPR014891 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_025805389.1 | E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like isoform X1 [Panicum hallii] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WM05 | DWNN domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology