Basic Information
Locus ID:
Chr19G005260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 5190446 | 5194765 | - | Chr19G005260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 383 | 650 | 1.88809E-98 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 31 | 137 | 3.1E-15 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 380 | 648 | 2.1E-47 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 170 | 264 | 3.4E-8 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 357 | 650 | 7.96E-82 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 662 | 3.4E-59 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 157 | 267 | 9.6E-18 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 452 | 6.9E-37 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 23 | 140 | 4.2E-20 | IPR038408 |
| SMART | SM00220 | serkin_6 | 377 | 652 | 1.9E-32 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 157 | 267 | 16.787571 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 27 | 140 | 18.20875 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 377 | 650 | 37.558998 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 498 | 510 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 688 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.2 | - | 0 |
| RefSeq | XP_008653174.1 | cysteine-rich receptor-like protein kinase 10 [Zea mays] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3H2Y3 | Cysteine-rich receptor-like protein kinase 25 OS=Panicum hallii OX=206008 GN=PAHAL_2G396600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3243, BH03.3430, CH03.3635, CH03.3636 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_7AG0570270, gene-QOZ80_7AG0570320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0139040.1, HORVU.MOREX.r3.7HG0638110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040820, gene-QYE76_040848 |
| Poaceae | Oryza coarctata | 2 | Oco13G009240, Oco14G009630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g35140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G301000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304253 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005260, Chr27G012000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1046700, Tel2E01G404800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028890, gene_TRIDC2BG032550 |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G217200.1, TraesCS2A02G562800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb323230_P001, Zm00001eb323240_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6572 |