Basic Information
Locus ID:
Chr19G002870
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 2573233 | 2575731 | + | Chr19G002870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 53 | 123 | 9.51582E-33 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 52 | 121 | 4.9E-29 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 53 | 122 | 5.37E-25 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 6 | 60 | 4.39E-9 | IPR008991 |
| Gene3D | G3DSA:2.40.50.140 | - | 53 | 125 | 6.4E-34 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 23 | 52 | 2.7E-12 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 52 | 121 | 3.7E-33 | IPR020189 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_011083979.1 | eukaryotic translation initiation factor 5A-2 [Sesamum indicum] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1D415 | Eukaryotic translation initiation factor 5A OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015673 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology