Basic Information
Locus ID:
Chr19G002510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 2185863 | 2188034 | + | Chr19G002510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 1 | 72 | 2.11252E-44 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 83 | 155 | 6.9E-18 | IPR001351 |
| Pfam | PF07650 | KH domain | 2 | 70 | 2.3E-11 | IPR004044 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 70 | 156 | 1.19E-20 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 2 | 76 | 1.13E-21 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 69 | 5.6E-35 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 70 | 172 | 1.2E-42 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 2 | 156 | 3.5E-55 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 1 | 69 | 10.239942 | IPR004044 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53870.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_002463168.1 | 40S ribosomal protein S3-3 [Sorghum bicolor] | 0 |
| Q9M339 | Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8D7AKG4 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_197420.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology