Basic Information
Locus ID:
Chr19G001310
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 1176646 | 1182802 | + | Chr19G001310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 140 | 402 | 1.3877E-128 | - |
| Pfam | PF00069 | Protein kinase domain | 141 | 403 | 8.5E-69 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 431 | 585 | 1.41E-17 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 139 | 463 | 3.37E-82 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 138 | 226 | 3.8E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 227 | 417 | 3.7E-56 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 421 | 512 | 6.5E-17 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 428 | 582 | 6.5E-17 | - |
| SMART | SM00220 | serkin_6 | 141 | 403 | 3.2E-98 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 445 | 480 | 9.018011 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 141 | 403 | 50.138256 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 265 | 277 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 147 | 173 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 0 |
| RefSeq | XP_004958484.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1 [Setaria italica] | 0 |
| Q10KY3 | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CAMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VP63 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_10890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology