Basic Information
Locus ID:
Chr19G000930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
protein dimerization activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000019 | 842584 | 844145 | - | Chr19G000930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 47 | 5.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 76 | 1.31E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 50 | 2.9E-6 | - |
| SMART | SM00256 | fbox_2 | 11 | 52 | 0.0074 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 8.649649 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 460 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039797082.1 | uncharacterized protein LOC120662067 isoform X3 [Panicum virgatum] | 0 |
| TrEMBL | A0A0A9MQ50 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH02.1933, CH02.1946 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_4BG0352940, gene-QOZ80_6AG0533510 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_008233, gene-QYE76_008236, gene-QYE76_008837 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G010670, Oco01G011070 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28520.1, LOC_Os01g32640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G371000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0500709, Pt_Chr0704898 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G000930, Chr25G013870, Chr25G013880, Chr27G016500 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G069100, Tel1E01G099600, Tel1E01G744700 |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G439200.1, TraesCS1B02G055300.1 ... |