Basic Information
Locus ID:
Chr18G015990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 44650671 | 44653035 | + | Chr18G015990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 261 | 287 | 6.8E-7 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 435 | 520 | 3.6E-31 | IPR032867 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 136 | 418 | 3.4E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 168 | 321 | 3.3E-23 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 261 | 287 | 4.2E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 258 | 288 | 9.415814 | IPR002885 |
| PRINTS | PR01217 | Proline rich extensin signature | 137 | 162 | 1.4E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 33 | 49 | 1.4E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 108 | 125 | 1.4E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 64 | 85 | 1.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021311222.1 | pentatricopeptide repeat-containing protein At2g15690 [Sorghum bicolor] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9SJ45 | DYW_deaminase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_52612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology