Basic Information
Locus ID:
Chr18G014960
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 43693793 | 43696577 | - | Chr18G014960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 18 | 166 | 8.75534E-48 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 279 | 2.37249E-23 | - |
| Pfam | PF02225 | PA domain | 76 | 145 | 4.1E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 236 | 279 | 7.3E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 146 | 9.16E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 290 | 3.83E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 284 | 2.6E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 159 | 1.6E-25 | - |
| SMART | SM00184 | ring_2 | 237 | 278 | 2.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 279 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 480 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025823053.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X2 [Panicum hallii] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U0L6 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_40283 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology