Basic Information
Locus ID:
Chr18G014780
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 43460721 | 43469083 | - | Chr18G014780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 104 | 230 | 6.5427E-29 | - |
| CDD | cd12108 | Hr-like | 350 | 469 | 1.33564E-12 | - |
| CDD | cd12108 | Hr-like | 706 | 865 | 3.57782E-24 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1175 | 1218 | 1.82367E-17 | - |
| Pfam | PF13639 | Ring finger domain | 1175 | 1217 | 1.0E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 704 | 866 | 1.1E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 107 | 232 | 8.1E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 347 | 469 | 1.7E-5 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1047 | 1122 | 4.8E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1223 | 1280 | 4.7E-23 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1113 | 1168 | 2.09E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1174 | 1222 | 1.72E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1039 | 1103 | 1.26E-16 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 346 | 486 | 2.0E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1247 | 1290 | 3.9E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 700 | 919 | 3.9E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1170 | 1220 | 6.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 100 | 250 | 1.6E-32 | - |
| SMART | SM00184 | ring_2 | 1176 | 1217 | 1.4E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1040 | 1109 | 25.757315 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1112 | 1175 | 29.772579 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1176 | 1218 | 11.013978 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 955 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 953 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_004961317.1 | zinc finger protein BRUTUS isoform X2 [Setaria italica] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RN61 | Zinc finger protein BRUTUS OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS54600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology