Basic Information
Locus ID:
Chr18G012680
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
calcium ion binding
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 41163544 | 41171624 | - | Chr18G012680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 12 | 84 | 8.99105E-18 | IPR002048 |
| CDD | cd00051 | EFh | 58 | 115 | 1.87637E-11 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 37 | 85 | 6.3E-11 | IPR002048 |
| Pfam | PF00036 | EF hand | 94 | 115 | 5.2E-7 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 7 | 115 | 2.91E-31 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 86 | 116 | 6.7E-12 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 85 | 1.1E-30 | - |
| SMART | SM00054 | efh_1 | 94 | 116 | 2.6 | IPR002048 |
| SMART | SM00054 | efh_1 | 58 | 86 | 3.7E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 12 | 50 | 3.8 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 54 | 89 | 13.983393 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 90 | 116 | 15.350267 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 67 | 79 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 103 | 115 | - | IPR018247 |
| PRINTS | PR00450 | Recoverin family signature | 108 | 116 | 4.7E-5 | - |
| PRINTS | PR00450 | Recoverin family signature | 62 | 83 | 4.7E-5 | - |
| PRINTS | PR00450 | Recoverin family signature | 86 | 105 | 4.7E-5 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04015 (Rap1 signaling pathway)
map04015 (Rap1 signaling pathway)
ko04016 (MAPK signaling pathway - plant)
map04016 (MAPK signaling pathway - plant)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04070 (Phosphatidylinositol signaling system)
map04070 (Phosphatidylinositol signaling system)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
ko04745 (Phototransduction - fly)
map04745 (Phototransduction - fly)
ko04750 (Inflammatory mediator regulation of TRP channels)
map04750 (Inflammatory mediator regulation of TRP channels)
ko04916 (Melanogenesis)
map04916 (Melanogenesis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66410.2 | calmodulin 4. encodes a calmodulin | 0 |
| RefSeq | XP_008810798.1 | calmodulin-7-like [Phoenix dactylifera] | 0 |
| P04464 | Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7J9DPK1 | Calmodulin (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_011969 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology