Basic Information
Locus ID:
Chr18G011980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 40196840 | 40204363 | + | Chr18G011980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 463 | 0.0074 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 383 | 421 | 8.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 219 | 491 | 9.7E-26 | IPR036322 |
| SUPERFAMILY | SSF49354 | PapD-like | 79 | 188 | 1.28E-6 | IPR008962 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 72 | 205 | 9.8E-10 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 496 | 1.3E-44 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 283 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 421 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 463 | 5.6E-4 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 79 | 201 | 9.204492 | IPR000535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 387 | 423 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 430 | 12.613797 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 408 | 422 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_048541722.1 | uncharacterized protein LOC125520751 isoform X5 [Triticum urartu] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811QD78 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS37637 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology