Basic Information
Locus ID:
Chr18G011580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CPK13
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 39616812 | 39626572 | - | Chr18G011580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 69 | 327 | 6.45648E-133 | - |
| CDD | cd00051 | EFh | 447 | 509 | 1.71962E-19 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 70 | 328 | 8.9E-72 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 446 | 509 | 3.5E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 374 | 434 | 1.2E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 356 | 534 | 2.62E-45 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 68 | 335 | 8.77E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 72 | 155 | 6.9E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 337 | 512 | 4.7E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 156 | 336 | 3.2E-59 | - |
| SMART | SM00054 | efh_1 | 375 | 403 | 1.4E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 411 | 439 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 483 | 511 | 9.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 447 | 475 | 2.3E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 70 | 328 | 6.1E-95 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 443 | 478 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 70 | 328 | 46.746098 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 479 | 514 | 14.373928 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 371 | 406 | 16.800829 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 384 | 396 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 492 | 504 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 456 | 468 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 190 | 202 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 76 | 99 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_039800613.1 | calcium-dependent protein kinase 16 [Panicum virgatum] | 0 |
| Q6I5I8 | Calcium-dependent protein kinase 16 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK16 PE=3 SV=1 | 0 | |
| TrEMBL | A0A4U6VC09 | Calcium-dependent protein kinase 30 OS=Setaria viridis OX=4556 GN=SEVIR_3G216400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology