Basic Information
Locus ID:
Chr18G011450
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 39462155 | 39472260 | - | Chr18G011450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1125 | 1514 | 8.4972E-105 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1172 | 1516 | 4.2E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1118 | 1509 | 4.71E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 119 | 541 | 8.0E-32 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1071 | 1288 | 2.4E-37 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 112 | 549 | 4.9E-44 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1399 | 1514 | 1.3E-33 | - |
| SMART | SM00119 | hect_3 | 1134 | 1516 | 5.0E-96 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1137 | 1516 | 62.783653 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 843 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_039837940.1 | E3 ubiquitin-protein ligase UPL4-like [Panicum virgatum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9U7X4 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_35894 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology