Basic Information
Locus ID:
Chr18G011190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 39083306 | 39084678 | + | Chr18G011190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1 | 119 | 9.4E-15 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 155 | 7.42E-19 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 136 | 3.1E-20 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 119 | 13.700807 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 173 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025793942.1 | autophagy-related protein 9 isoform X1 [Panicum hallii] | 0 |
| Q6AVM3 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Oryza sativa subsp. japonica OX=39947 GN=CCAMK PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9JNC4 | Autophagy-related protein 9 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G011190, Chr25G014950 |