Basic Information
Locus ID:
Chr18G008970
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 34294691 | 34295893 | + | Chr18G008970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 71 | 2.7E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 126 | 186 | 5.3E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 372 | 2.21E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 375 | 1.8E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 196 | 289 | 5.1E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 195 | 3.1E-34 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 241 | 265 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 149 | 173 | 3.4 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 151 | 174 | 7.55024 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 152 | 165 | 2.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 241 | 254 | 2.3E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_002439784.1 | probable LRR receptor-like serine/threonine-protein kinase IRK [Sorghum bicolor] | 0 |
| TrEMBL | A0A0A9CU75 | LRRNT_2 domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology