Basic Information
Locus ID:
Chr18G008280
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 32175369 | 32176969 | - | Chr18G008280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 103 | 229 | 9.77759E-23 | IPR002083 |
| Pfam | PF00917 | MATH domain | 121 | 227 | 0.0011 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 246 | 348 | 1.2E-17 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 101 | 233 | 1.21E-30 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 248 | 349 | 1.65E-20 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 350 | 418 | 5.9E-11 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 238 | 349 | 1.9E-23 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 101 | 233 | 6.8E-25 | IPR008974 |
| SMART | SM00225 | BTB_4 | 248 | 349 | 4.1E-18 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 102 | 229 | 17.527157 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 248 | 314 | 12.743157 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_004986481.2 | BTB/POZ and MATH domain-containing protein 1 [Setaria italica] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SH50 | BTB domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_56643 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0111710, gene-QOZ80_2AG0117420 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr14G006490, Chr18G008260, Chr18G008270, Chr18G008280 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43920 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15244 |