halophFGD

Basic Information

Locus ID: Chr18G004230

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: RING-variant domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000018	7541053	7542119	-	Chr18G004230

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	13	93	5.1E-6	IPR013083

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015638295.1	uncharacterized protein LOC4338078 [Oryza sativa Japonica Group]	0
TrEMBL	Q60EZ3	Os05g0207400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0207400 PE=2 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg14316, jg14814, jg19297, jg22163, jg24367, jg24968, jg9990 ... jg34167, jg38714
Aizoaceae	Mesembryanthemum crystallinum	5	gene_15410, gene_22338, gene_23741, gene_26006, gene_7476
Amaranthaceae	Atriplex hortensis	3	Ah011717, Ah017027, Ah035224
Amaranthaceae	Beta vulgaris	2	BVRB_2g024600, BVRB_8g181060
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg12001, Sbi_jg21345, Sbi_jg22504, Sbi_jg40390 ... Sbi_jg50389
Amaranthaceae	Salicornia europaea	3	Seu_jg16389, Seu_jg1967, Seu_jg21217
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00009560, GOSA_00011534, GOSA_00016394
Amaranthaceae	Suaeda glauca	6	Sgl45522, Sgl50295, Sgl62494, Sgl67043, Sgl80405, Sgl82866
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000012326, gene:ENSEOMG00000017848 ... gene:ENSEOMG00000018504, gene:ENSEOMG00000021309, gene:ENSEOMG00000032358, gene:ENSEOMG00000047712, gene:ENSEOMG00000048578
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1BG0019140, CQ.Regalona.r1.2AG0020870 ... CQ.Regalona.r1.8AG0007270, CQ.Regalona.r1.8BG0007990, CQ.Regalona.r1.9BG0012860
Anacardiaceae	Pistacia vera	4	pistato.v30062090, pistato.v30072070, pistato.v30176370 ... pistato.v30285140
Apiaceae	Apium graveolens	10	Ag10G01600, Ag10G01601, Ag10G01604, Ag11G04155, Ag11G04849 ... Ag3G00529, Ag8G00134, Ag8G00475, AgUnG00283, AgUnG00384
Arecaceae	Cocos nucifera	5	COCNU_02G001910, COCNU_04G000980, COCNU_11G012570 ... COCNU_12G008250, COCNU_16G008610
Arecaceae	Phoenix dactylifera	8	gene-LOC103704091, gene-LOC103705663, gene-LOC103707353 ... gene-LOC103709027, gene-LOC103715504, gene-LOC103722534, gene-LOC103722642, gene-LOC120110074
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1567.V1.1, AsparagusV1_07.94.V1.1 ... AsparagusV1_08.3593.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G22356, Ftri12G20719, Ftri17G24985, Ftri6G01863 ... Ftri9G01098, Ftri9G11748
Brassicaceae	Arabidopsis thaliana	5	AT2G34200.1, AT2G37950.1, AT5G01070.2, AT5G05830.1 ... AT5G59000.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10010904m.g.v1.0, Thhalv10014600m.g.v1.0 ... Thhalv10014658m.g.v1.0, Thhalv10014685m.g.v1.0, Thhalv10017163m.g.v1.0, Thhalv10017238m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp4g16510.v2.2, Sp4g20260.v2.2, Sp5g08350.v2.2 ... Sp6g20700.v2.2, Sp6g37070.v2.2, Sp6g40460.v2.2
Brassicaceae	Brassica nigra	11	BniB02g038610.2N, BniB02g054860.2N, BniB02g058010.2N ... BniB05g028970.2N, BniB06g006630.2N, BniB06g023500.2N, BniB06g065690.2N, BniB08g000430.2N, BniB08g012820.2N, BniB08g021610.2N, BniB08g024100.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0193, Ceq02G2888, Ceq08G1078, Ceq08G1965
Casuarinaceae	Casuarina glauca	6	Cgl02G0214, Cgl02G3005, Cgl02G3008, Cgl02G3010, Cgl08G1102 ... Cgl08G2042
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g18740, gene.Cymno03g01120, gene.Cymno11g09420
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g23170, gene.Thate11g00060
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-3830, nbisL1-mrna-3979, nbisL1-mrna-4740 ... nbisL1-mrna-5870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1097, evm.TU.LG02.1813, evm.TU.LG12.797
Plantaginaceae	Plantago ovata	6	Pov_00002816, Pov_00008595, Pov_00011862, Pov_00011865 ... Pov_00038384, Pov_00038826
Plumbaginaceae	Limonium bicolor	8	Lb1G02226, Lb1G05073, Lb3G19523, Lb4G24323, Lb4G24341 ... Lb4G25999, Lb6G29903, Lb6G30665
Poaceae	Echinochloa crus-galli	9	AH02.3070, AH05.2215, AH05.645, BH02.3157, BH02.3901 ... BH05.2299, BH05.698, CH05.2419, CH05.800
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0040000, gene-QOZ80_1BG0090030 ... gene-QOZ80_5AG0371050, gene-QOZ80_5AG0401760, gene-QOZ80_5BG0418570, gene-QOZ80_5BG0450320
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0074040.1, HORVU.MOREX.r3.3HG0286790.1 ... HORVU.MOREX.r3.3HG0301890.1
Poaceae	Lolium multiflorum	5	gene-QYE76_010409, gene-QYE76_014328, gene-QYE76_017524 ... gene-QYE76_055427, gene-QYE76_056408
Poaceae	Oryza coarctata	7	Oco01G019880, Oco01G025000, Oco02G025890, Oco09G004410 ... Oco09G011140, Oco10G004370, Oco10G011090
Poaceae	Oryza sativa	3	LOC_Os01g53130.2, LOC_Os05g11720.1, LOC_Os05g37900.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G265600, gene-BS78_03G337500 ... gene-BS78_09G164000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0300020, Pt_Chr0501509, Pt_Chr0504810, Pt_Chr0601520
Poaceae	Sporobolus alterniflorus	12	Chr01G019490, Chr02G004610, Chr02G010460, Chr03G020210 ... Chr05G022940, Chr05G028730, Chr08G021990, Chr0G012570, Chr18G004230, Chr18G010830, Chr22G006820, Chr22G013030
Poaceae	Thinopyrum elongatum	4	Tel1E01G228400, Tel1E01G455800, Tel3E01G463100 ... Tel3E01G582400
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG041730, gene_TRIDC1BG022000 ... gene_TRIDC1BG047590, gene_TRIDC3AG041670, gene_TRIDC3AG052640, gene_TRIDC3BG047030, gene_TRIDC3BG059100
Poaceae	Triticum aestivum	11	TraesCS1A02G280300.1, TraesCS1B02G144400.1 ... TraesCS1B02G289200.1, TraesCS1D02G128900.1, TraesCS1D02G279400.1, TraesCS3A02G281400.1, TraesCS3A02G365100.1, TraesCS3B02G315100.1, TraesCS3B02G397000.1, TraesCS3D02G281400.1, TraesCS3D02G358300.1
Poaceae	Zea mays	5	Zm00001eb147890_P002, Zm00001eb289390_P001 ... Zm00001eb333860_P001, Zm00001eb351540_P001, Zm00001eb361990_P001
Poaceae	Zoysia japonica	4	nbis-gene-12815, nbis-gene-17979, nbis-gene-24078 ... nbis-gene-31628
Poaceae	Zoysia macrostachya	5	Zma_g11546, Zma_g27088, Zma_g27846, Zma_g28349, Zma_g8586
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.444, evm.TU.LG04.315, evm.TU.LG05.960 ... evm.TU.LG18.1377, evm.TU.LG20.510, evm.TU.LG25.377
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g00380, gene.Posoc03g17810, gene.Posoc07g15680 ... gene.Posoc08g02630
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.811, evm.TU.Scaffold_13_RagTag.288 ... evm.TU.Scaffold_1_RagTag.1745, evm.TU.Scaffold_2_RagTag.676, evm.TU.Scaffold_4_RagTag.1780
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-24045, nbisL1-mrna-25959, nbisL1-mrna-30171 ... nbisL1-mrna-30756, nbisL1-mrna-4519, nbisL1-mrna-5537
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-13950, nbisL1-mrna-1435, nbisL1-mrna-14885 ... nbisL1-mrna-17992, nbisL1-mrna-6090
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-16227, nbisL1-mrna-19949, nbisL1-mrna-20966 ... nbisL1-mrna-4578, nbisL1-mrna-9542
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000008l.999, evm.TU.utg000009l.1048 ... evm.TU.utg000015l.176, evm.TU.utg000016l.652, evm.TU.utg000027l.147
Rhizophoraceae	Kandelia obovata	6	Maker00000043, Maker00005453, Maker00006340, Maker00015801 ... Maker00015955, Maker00016361
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10606, nbisL1-mrna-12749, nbisL1-mrna-14881 ... nbisL1-mrna-5000, nbisL1-mrna-5919
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-1077, nbisL1-mrna-13704, nbisL1-mrna-16461 ... nbisL1-mrna-16839, nbisL1-mrna-20934, nbisL1-mrna-21960
Salicaceae	Populus euphratica	9	populus_peu02066, populus_peu09922, populus_peu11378 ... populus_peu18014, populus_peu18031, populus_peu20370, populus_peu25696, populus_peu25720, populus_peu35739
Solanaceae	Lycium barbarum	8	gene-LOC132605831, gene-LOC132605968, gene-LOC132606829 ... gene-LOC132617614, gene-LOC132617965, gene-LOC132623052, gene-LOC132630617, gene-LOC132637805
Solanaceae	Solanum chilense	6	SOLCI000860600, SOLCI002409700, SOLCI002539000 ... SOLCI003087000, SOLCI004672700, SOLCI005542000
Solanaceae	Solanum pennellii	7	gene-LOC107010983, gene-LOC107014308, gene-LOC107021240 ... gene-LOC107023424, gene-LOC107024263, gene-LOC107029512, gene-LOC107032417
Tamaricaceae	Reaumuria soongarica	5	STRG.10271_chr07_+, STRG.13172_chr07_-, STRG.21493_chr08_- ... STRG.26853_chr04_+, STRG.3142_chr01_-
Tamaricaceae	Tamarix chinensis	6	TC02G1830, TC03G1941, TC05G1522, TC07G0358, TC08G0420 ... TC08G0937
Zosteraceae	Zostera marina	3	Zosma04g15460.v3.1, Zosma05g07130.v3.1, Zosma06g27810.v3.1