Basic Information
Locus ID:
Chr18G002830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 3727851 | 3731092 | - | Chr18G002830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 180 | 221 | 1.07985E-23 | - |
| Pfam | PF13639 | Ring finger domain | 179 | 221 | 7.7E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 244 | 334 | 3.6E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 6 | 44 | 9.8E-15 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 227 | 3.33E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 227 | 1.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 180 | 220 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 180 | 221 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 342 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_047096312.1 | E3 ubiquitin-protein ligase RDUF2-like [Lolium rigidum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5W059 | RING-type E3 ubiquitin transferase OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0005g14570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology