Basic Information
Locus ID:
Chr18G002160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 2516306 | 2522721 | - | Chr18G002160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 969 | 1351 | 1.53556E-100 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1015 | 1353 | 4.7E-78 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 26 | 430 | 8.45E-21 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 959 | 1346 | 2.75E-86 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 970 | 1232 | 2.0E-35 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1238 | 1350 | 9.3E-29 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1099 | 1197 | 2.0E-35 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 48 | 440 | 1.7E-27 | IPR011989 |
| SMART | SM00119 | hect_3 | 977 | 1353 | 1.1E-85 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 993 | 1353 | 60.42754 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 721 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_034584351.1 | E3 ubiquitin-protein ligase UPL4-like isoform X1 [Setaria viridis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9U3U7 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_34190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology