Basic Information
Locus ID:
Chr18G002060
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 2400868 | 2403256 | - | Chr18G002060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 24 | 236 | 2.3812E-59 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 375 | 652 | 6.78516E-89 | - |
| Pfam | PF00139 | Legume lectin domain | 22 | 240 | 1.0E-40 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 371 | 585 | 6.5E-43 | IPR000719 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 23 | 236 | 4.2E-47 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 353 | 670 | 1.5E-73 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 347 | 457 | 3.8E-25 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 19 | 246 | 2.1E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 458 | 671 | 1.1E-58 | - |
| SMART | SM00220 | serkin_6 | 369 | 660 | 5.0E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 369 | 661 | 37.318718 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 375 | 398 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 503 | 515 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 286 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03140.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_004960359.1 | L-type lectin-domain containing receptor kinase VIII.2 [Setaria italica] | 0 |
| Q9LYX1 | L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK82 PE=2 SV=1 | 0 | |
| TrEMBL | B6SWP8 | Carbohydrate binding protein OS=Zea mays OX=4577 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology