Basic Information
Locus ID:
Chr18G000240
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
UBA-like domain (DUF1421)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000018 | 288306 | 294213 | + | Chr18G000240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00609 | AAT_like | 621 | 943 | 8.2559E-24 | - |
| Pfam | PF07223 | UBA-like domain (DUF1421) | 524 | 567 | 1.2E-18 | IPR010820 |
| Pfam | PF04864 | Allinase | 576 | 945 | 3.0E-131 | IPR006948 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 570 | 944 | 9.61E-61 | IPR015424 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 837 | 946 | 1.8E-33 | IPR015422 |
| Gene3D | G3DSA:3.40.640.10 | - | 620 | 829 | 9.7E-69 | IPR015421 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 57 | - | - |
| Coils | Coil | Coil | 193 | 213 | - | - |
| Coils | Coil | Coil | 147 | 167 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24670.1 | tryptophan aminotransferase related 2. Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. | 0 |
| RefSeq | XP_025807143.1 | uncharacterized protein LOC112885728 [Panicum hallii] | 0 |
| Q5VQG8 | Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR2 PE=1 SV=1 | 0 | |
| TrEMBL | M7Z4Z7 | Tryptophan aminotransferase 1 OS=Triticum urartu OX=4572 GN=TRIUR3_16195 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17772, jg17773, jg40389 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12710 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah007373, Ah007375, Ah026624 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18950, Sbi_jg37405 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5245 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019857 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22481, Sgl27700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009038, gene:ENSEOMG00000026548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016430, CQ.Regalona.r1.4BG0013680 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022870, pistato.v30139690 |
| Apiaceae | Apium graveolens | 1 | Ag9G00456 |
| Arecaceae | Cocos nucifera | 6 | COCNU_05G004260, COCNU_05G010760, COCNU_13G000490 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703781, gene-LOC103711568, gene-LOC103715926 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.367.V1.1, AsparagusV1_05.2964.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G24961 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G01560.1, AT5G14540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g00490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g024020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1945 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g05390, gene.Cymno09g09920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0234s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02240 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.316, evm.TU.LG10.692 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024160 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22465 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.505, AH05.1111, BH02.524, BH05.1375, CH02.571 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0011270, gene-QOZ80_1BG0059870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0026430.1, HORVU.MOREX.r3.3HG0233830.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009825, gene-QYE76_049958, gene-QYE76_049967 |
| Poaceae | Oryza coarctata | 4 | Oco01G002780, Oco02G002820, Oco09G003280, Oco10G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g07520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G050400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0200405, Pt_Chr0207408, Pt_Chr0501688, Pt_Chr0501737 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G019530, Chr03G004990, Chr05G010580, Chr08G000130 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G211300, Tel3E01G162600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG014250, gene_TRIDC1BG019920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G113700.1, TraesCS1B02G134000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb122990_P001, Zm00001eb336590_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13119, nbis-gene-18103, nbis-gene-23537 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10028, Zma_g26514, Zma_g7675 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2174, evm.TU.LG14.1365 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g20450, gene.Posoc04g00660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.447, evm.TU.Scaffold_6_RagTag.147 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14964, nbisL1-mrna-28915 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1557, nbisL1-mrna-634 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-122, nbisL1-mrna-1881 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.286, evm.TU.utg000011l.103 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000094, Maker00007171 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11870, nbisL1-mrna-14619 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1439, nbisL1-mrna-17449 |
| Salicaceae | Populus euphratica | 3 | populus_peu01048, populus_peu28688, populus_peu30116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621309 |
| Solanaceae | Solanum chilense | 2 | SOLCI002260400, SOLCI005663200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007591, gene-LOC107011549 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25547_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0989 |
| Zosteraceae | Zostera marina | 2 | Zosma06g00910.v3.1, Zosma06g06250.v3.1 |