Basic Information
Locus ID:
Chr17G017740
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 45917109 | 45919809 | + | Chr17G017740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 157 | 239 | 1.15006E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 229 | 8.7E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 145 | 251 | 6.85E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 153 | 243 | 1.6E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 158 | 239 | 7.9E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 243 | 12.372725 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.5 | - | 0 |
| RefSeq | XP_040382744.1 | RNA-binding protein 1-like isoform X2 [Oryza brachyantha] | 0 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5R7J8 | RRM domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0008g11686 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology