Basic Information
Locus ID:
Chr17G016720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 44945036 | 44950568 | + | Chr17G016720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 147 | 221 | 1.8792E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 270 | 344 | 5.36511E-31 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 272 | 338 | 1.5E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 63 | 129 | 8.9E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 218 | 1.5E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 258 | 348 | 4.21E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 59 | 228 | 4.08E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 143 | 1.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 144 | 238 | 2.2E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 245 | 348 | 2.8E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 147 | 220 | 1.6E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 271 | 340 | 6.0E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 62 | 131 | 8.9E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 147 | 220 | 0.53 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 271 | 340 | 0.96 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 224 | 16.773018 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 270 | 344 | 15.800861 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 135 | 15.374476 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 267 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_002445861.1 | oligouridylate-binding protein 1B [Sorghum bicolor] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | C5YIB3 | Oligouridylate-binding protein 1B OS=Sorghum bicolor OX=4558 GN=SORBI_3007G203200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology