Basic Information
Locus ID:
Chr17G016160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 44291661 | 44297422 | + | Chr17G016160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 53 | 350 | 1.41615E-172 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 367 | 669 | 2.21963E-149 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 372 | 665 | 4.6E-30 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 53 | 350 | 1.36E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 366 | 669 | 1.05E-44 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 51 | 351 | 6.7E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 365 | 670 | 4.5E-44 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 53 | 351 | 27.143124 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 367 | 670 | 28.312418 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 744 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66970.1 | SHV3-like 2. | 0 |
| RefSeq | XP_004973844.1 | glycerophosphodiester phosphodiesterase GDPDL4 isoform X1 [Setaria italica] | 0 |
| Q7Y208 | Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T427 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_48409 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology