Basic Information
Locus ID:
Chr17G015530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Phospho-2-dehydro-3-deoxyheptonate aldolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 43282961 | 43286493 | - | Chr17G015530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01474 | Class-II DAHP synthetase family | 44 | 496 | 8.9E-190 | IPR002480 |
| SUPERFAMILY | SSF51569 | Aldolase | 41 | 499 | 1.39E-191 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 77 | 247 | 5.4E-50 | IPR013785 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 250 | 500 | 1.1E-105 | IPR013785 |
| TIGRFAM | TIGR01358 | DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase | 44 | 499 | 6.1E-216 | IPR002480 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
ko02024 (Quorum sensing)
map02024 (Quorum sensing)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22410.1 | Class-II DAHP synthetase family protein. | 0 |
| RefSeq | XP_039816279.1 | phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Panicum virgatum] | 0 |
| Q75W16 | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2B9 | Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Eragrostis curvula OX=38414 GN=EJB05_48614 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology