Basic Information
Locus ID:
Chr17G015310
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 42844243 | 42858803 | - | Chr17G015310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 449 | 751 | 4.0E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 120 | 157 | 7.5E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 445 | 756 | 6.67E-81 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 117 | 159 | 9.94E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 442 | 765 | 2.5E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 108 | 161 | 3.9E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 120 | 157 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 449 | 754 | 51.204258 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 450 | 465 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 120 | 157 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 858 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 801 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_004973704.1 | ubiquitin carboxyl-terminal hydrolase 16 [Setaria italica] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2E2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eragrostis curvula OX=38414 GN=EJB05_48675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology