Basic Information
Locus ID:
Chr17G013720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 38814892 | 38820411 | + | Chr17G013720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.11377E-28 | - |
| Pfam | PF09280 | XPC-binding domain | 258 | 314 | 2.3E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 1.3E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 341 | 376 | 3.1E-10 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 154 | 192 | 2.1E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 1.4E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 323 | 383 | 1.58E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 201 | 1.02E-10 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 254 | 320 | 1.19E-21 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 248 | 314 | 1.8E-25 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 3.7E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 147 | 197 | 2.8E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 334 | 380 | 7.6E-20 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.6E-16 | IPR000626 |
| SMART | SM00727 | CBM | 256 | 299 | 6.1E-9 | IPR006636 |
| SMART | SM00165 | uba_6 | 341 | 378 | 1.4E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 154 | 194 | 2.7E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 383 | 4.7E-111 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 155 | 195 | 11.848078 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.366758 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 339 | 379 | 14.450564 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 366 | 8.0E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 351 | 8.0E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 284 | 306 | 8.0E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 382 | 8.0E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 101 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_051187971.1 | probable ubiquitin receptor RAD23 isoform X2 [Lolium perenne] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T458 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_48961 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology